2005-present Lecturer in Bioinformatics, Faculty of Life Sciences, University of Manchester, UK
2003-2005 Postdoctoral Fellowship, Department of Genetics, University of Cambridge, UK
2001-2003 Postdoctoral Fellowship, Department of Genome Sciences, Lawrence Berkeley National Laboratory, USA
1996-2001 Ph.D., Department of Ecology and Evolution, University of Chicago, USA
1995-1996 M.A.T. (Biology), Department of Education, Cornell University, USA
1991-1995 B.S., Section of Ecology and Systematics, Cornell University, USA

http://www.bioinf.manchester.ac.uk/bergman/

Evolutionary forces act on promoter length: identification of enriched cis-regulatory elements. Kristiansson E, Thorsen M, Tamás MJ, Nerman O Mol Biol Evol 2009 Jun 26:1299-307 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Dave T Gerrard and Casey Bergman Evaluated 26 Oct 2009 Variable locus length in the human genome leads to ascertainment bias in functional inference for non-coding elements. Taher L, Ovcharenko I Bioinformatics 2009 Mar 1 25(5):578-84 [abstract on PubMed] [related articles] [FREE full text] Selected by | Casey Bergman Evaluated 23 Mar 2009 Detecting influenza epidemics using search engine query data. Ginsberg J, Mohebbi MH, …, Smolinski MS, Brilliant L Nature 2008 Nov 19 [abstract on PubMed] [related articles] [full text] Selected by | Casey Bergman Evaluated 25 Nov 2008 Resurrection of DNA function in vivo from an extinct genome. Pask AJ, Behringer RR, Renfree MB PLoS ONE 2008 3(5):e2240 [abstract on PubMed] [related articles] [FREE full text] Selected by | Casey Bergman Evaluated 27 May 2008 Jane: Suggesting Journals, Finding Experts. Schuemie MJ, Kors JA Bioinformatics 2008 Jan 28 [abstract on PubMed] [related articles] [full text] Selected by | Casey Bergman Evaluated 14 Feb 2008 Effects of recombination rate on human endogenous retrovirus fixation and persistence. Katzourakis A, Pereira V, Tristem M J Virol 2007 Oct 81(19):10712-7 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Casey Bergman Evaluated 28 Sep 2007 Evolutionary history of mammalian transposons determined by genome-wide defragmentation. Giordano J, Ge Y, …, Benson G, Warburton PE PLoS Comput Biol 2007 Jul 3(7):e137 [abstract on PubMed] [related articles] [FREE full text] Selected by | Casey Bergman Evaluated 24 Jul 2007 Transposon insertion site profiling chip (TIP-chip). Wheelan SJ, Scheifele LZ, …, Irizarry RA, Boeke JD Proc Natl Acad Sci U S A 2006 Nov 21 103(47):17632-7 [abstract on PubMed] [related articles] [FREE full text] Selected by | Casey Bergman Evaluated 24 Jul 2007 Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila. Haag-Liautard C, Dorris M, …, Charlesworth B, Keightley PD Nature 2007 Jan 4 445(7123):82-5 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Casey Bergman Evaluated 13 Mar 2007 Identification of transposable elements using multiple alignments of related genomes. Caspi A, Pachter L Genome Res 16(2):260-70 [abstract on PubMed] [related articles] [FREE full text] Selected by | Casey Bergman Evaluated 14 Nov 2006 A mutation accumulation assay reveals a broad capacity for rapid evolution of gene expression. Rifkin SA, Houle D, Kim J, White KP Nature 2005 Nov 10 438(7065):220-3 [abstract on PubMed] [related articles] [full text] [order article] Selected by | Casey Bergman Evaluated 31 Aug 2006 The regulatory content of intergenic DNA shapes genome architecture. Nelson CE, Hersh BM, Carroll SB Genome Biol 2004 5(4):R25 [abstract on PubMed] [related articles] [FREE full text] Selected by | Casey Bergman Evaluated 30 Jun 2006 Transposon-free regions in mammalian genomes. Simons C, Pheasant M, Makunin IV, Mattick JS Genome Res 2006 Feb 16(2):164-72 [abstract on PubMed] [related articles] [FREE full text] Selected by | Casey Bergman Evaluated 2 May 2006 ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun. Li R, Ye J, …, Wong GK, Wang J PLoS Comput Biol 2005 Sep 1(4):e43 [abstract on PubMed] [related articles] [FREE full text] Selected by | Casey Bergman Evaluated 24 Mar 2006

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