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Samuel Butcher
Department of Biochemistry, University of Wisconsin-Madison, Madison, United States of America

Faculty Member: Chemical Biology > Macromolecular Chemistry [ since 22 February 2002 ]
[ Homepage ] [ Evaluations ]
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http://www.biochem.wisc.edu/butcher/index.html

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Evaluations

Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes.
Wang Y, Juranek S, …, Tuschl T, Patel DJ
Nature 2009 Oct 8 461(7265):754-61 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher / Pascale Legault
Evaluated 22 Oct 2009

Rational design of ligands targeting triplet repeating transcripts that cause RNA dominant disease: application to myotonic muscular dystrophy type 1 and spinocerebellar ataxia type 3.
Pushechnikov A, Lee MM, …, Thornton CA, Disney MD
J Am Chem Soc 2009 Jul 22 131(28):9767-79 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher
Evaluated 20 Jul 2009

X-ray structure of NS1 from a highly pathogenic H5N1 influenza virus.
Bornholdt ZA, Prasad BV
Nature 2008 Nov 5 [abstract on PubMed] [related articles] [full text]
Selected by | Samuel Butcher
Evaluated 13 Nov 2008

Structure of a tyrosyl-tRNA synthetase splicing factor bound to a group I intron RNA.
Paukstelis PJ, Chen JH, …, Lambowitz AM, Golden BL
Nature 2008 Jan 3 451(7174):94-7 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher / Robert Batey
Evaluated 11 Jan 2008

Visualizing spatially correlated dynamics that directs RNA conformational transitions.
Zhang Q, Stelzer AC, Fisher CK, Al-Hashimi HM
Nature 2007 Dec 20 450(7173):1263-7 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher
Evaluated 11 Jan 2008

Molecular basis of messenger RNA recognition by the specific bacterial repressing clamp RsmA/CsrA.
Schubert M, Lapouge K, …, Haas D, Allain FH
Nat Struct Mol Biol 2007 Sep 14(9):807-13 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher
Evaluated 9 Oct 2007

RNA channelling by the archaeal exosome.
Lorentzen E, Dziembowski A, …, Seraphin B, Conti E
EMBO Rep 2007 May 8(5):470-6 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Elmar Wahle / Samuel Butcher
Evaluated 13 Jul 2007

Electron cryotomography of immature HIV-1 virions reveals the structure of the CA and SP1 Gag shells.
Wright ER, Schooler JB, …, Sundquist WI, Jensen GJ
EMBO J 2007 Apr 18 26(8):2218-26 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher
Evaluated 6 Jul 2007

Binding of the human Prp31 Nop domain to a composite RNA-protein platform in U4 snRNP.
Liu S, Li P, …, Carlomagno T, Wahl MC
Science 2007 Apr 6 316(5821):115-20 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher / Kiyoshi Nagai / Robert Batey
Evaluated 17 Apr 2007

Structure and function of eukaryotic Ribonuclease P RNA.
Marquez SM, Chen JL, Evans D, Pace NR
Mol Cell 2006 Nov 3 24(3):445-56 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Samuel Butcher
Evaluated 17 Nov 2006

A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting.
Namy O, Moran SJ, …, Gilbert RJ, Brierley I
Nature 2006 May 11 441(7090):244-7 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher
Evaluated 17 May 2006

Metal ion dependence, thermodynamics, and kinetics for intramolecular docking of a GAAA tetraloop and receptor connected by a flexible linker.
Downey CD, Fiore JL, …, Nesbitt DJ, Pardi A
Biochemistry 2006 Mar 21 45(11):3664-73 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher
Evaluated 30 Mar 2006

Crystal structure of a core spliceosomal protein interface.
Schellenberg MJ, Edwards RA, …, Glover JN, MacMillan AM
Proc Natl Acad Sci U S A 2006 Jan 31 103(5):1266-71 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Samuel Butcher
Evaluated 6 Feb 2006

Identification and analysis of U5 snRNA variants in Drosophila.
Chen L, Lullo DJ, …, Rio DC, Doudna JA
RNA 2005 Oct 11(10):1473-7 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Samuel Butcher
Evaluated 12 Oct 2005

A single active-site region for a group II intron.
de Lencastre A, Hamill S, Pyle AM
Nat Struct Mol Biol 2005 Jul 12(7):626-7 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher
Evaluated 12 Jul 2005

Photocrosslinking detects a compact, active structure of the hammerhead ribozyme.
Heckman JE, Lambert D, Burke JM
Biochemistry 2005 Mar 22 44(11):4148-56 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher / Donald Burke
Evaluated 1 Apr 2005

Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function.
Theimer CA, Blois CA, Feigon J
Mol Cell 2005 Mar 4 17(5):671-82 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher
Evaluated 16 Mar 2005

RNA tertiary structure and cooperative assembly of a large ribonucleoprotein complex.
Recht MI, Williamson JR
J Mol Biol 2004 Nov 19 344(2):395-407 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher
Evaluated 22 Nov 2004

The SINE-encoded mouse B2 RNA represses mRNA transcription in response to heat shock.
Allen TA, Von Kaenel S, Goodrich JA, Kugel JF
Nat Struct Mol Biol 2004 Sep 11(9):816-21 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher / Reinhard Luehrmann / Jerry Workman
Evaluated 2 Sep 2004

Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III.
Wu H, Henras A, Chanfreau G, Feigon J
Proc Natl Acad Sci U S A 2004 Jun 1 101(22):8307-12 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Samuel Butcher
Evaluated 3 Aug 2004

Joint X-ray and NMR refinement of the yeast L30e-mRNA complex.
Chao JA, Williamson JR
Structure 2004 Jul 12(7):1165-76 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher
Evaluated 3 Aug 2004

Control of gene expression by a natural metabolite-responsive ribozyme.
Winkler WC, Nahvi A, …, Collins JA, Breaker RR
Nature 2004 Mar 18 428(6980):281-6 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | David M.J. Lilley / Richard Maraia / Samuel Butcher / Eric Westhof / Peter Unrau / Scott K Silverman / Fritz Eckstein / Burckhard Seelig / Andrew D Sharrocks / Janet Morrow / Andres Jaschke / John Burke / Reinhard Luehrmann
Evaluated 24 Mar 2004

Three-dimensional structure of C complex spliceosomes by electron microscopy.
Jurica MS, Sousa D, Moore MJ, Grigorieff N
Nat Struct Mol Biol 2004 Mar 11(3):265-9 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher
Evaluated 18 Mar 2004

Structure of HCV IRES domain II determined by NMR.
Lukavsky PJ, Kim I, Otto GA, Puglisi JD
Nat Struct Biol 2003 Dec 10(12):1033-8 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher / David M.J. Lilley
Evaluated 3 Nov 2003

RNA-ligand interactions: affinity and specificity of aminoglycoside dimers and acridine conjugates to the HIV-1 Rev response element.
Luedtke NW, Liu Q, Tor Y
Biochemistry 2003 Oct 7 42(39):11391-403 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher
Evaluated 20 Oct 2003

Mg2+-induced variations in the conformation and dynamics of HIV-1 TAR RNA probed using NMR residual dipolar couplings.
Al-Hashimi HM, Pitt SW, …, Xu W, Patel DJ
J Mol Biol 2003 Jun 20 329(5):867-73 [abstract on PubMed] [related articles] [order article]
Selected by | Samuel Butcher
Evaluated 25 Jun 2003

Mutations linked to dyskeratosis congenita cause changes in the structural equilibrium in telomerase RNA.
Theimer CA, Finger LD, Trantirek L, Feigon J
Proc Natl Acad Sci U S A 2003 Jan 21 100(2):449-54 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Samuel Butcher / Douglas Turner
Evaluated 24 Jan 2003

Creation of a zymogen.
Plainkum P, Fuchs SM, Wiyakrutta S, Raines RT
Nat Struct Biol 2003 Feb 10(2):115-9 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher / Ross Weatherman / Helene Rosenberg
Evaluated 24 Jan 2003

The GAAA tetraloop-receptor interaction contributes differentially to folding thermodynamics and kinetics for the P4-P6 RNA domain.
Young BT, Silverman SK
Biochemistry 2002 Oct 15 41(41):12271-6 [abstract on PubMed] [related articles] [order article]
Selected by | Samuel Butcher
Evaluated 11 Oct 2002

The global conformation of the hammerhead ribozyme determined using residual dipolar couplings.
Bondensgaard K, Mollova ET, Pardi A
Biochemistry 2002 Oct 1 41(39):11532-42 [abstract on PubMed] [related articles] [order article]
Selected by | Samuel Butcher
Evaluated 11 Oct 2002

Sequence and structural conservation in RNA ribose zippers.
Tamura M, Holbrook SR
J Mol Biol 2002 Jul 12 320(3):455-74 [abstract on PubMed] [related articles] [order article]
Selected by | Samuel Butcher / Thorsten Dieckmann
Evaluated 16 Jul 2002

A conserved RNA structure within the HCV IRES eIF3-binding site.
Collier AJ, Gallego J, …, Varani G, Walker S
Nat Struct Biol 2002 May 9(5):375-80 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher
Evaluated 20 May 2002

Crystal structure of an RNA tertiary domain essential to HCV IRES-mediated translation initiation.
Kieft JS, Zhou K, …, Jubin R, Doudna JA
Nat Struct Biol 2002 May 9(5):370-4 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher
Evaluated 20 May 2002

Two-metal active site binding of a Tn5 transposase synaptic complex.
Lovell S, Goryshin IY, Reznikoff WR, Rayment I
Nat Struct Biol 2002 Apr 9(4):278-81 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Samuel Butcher / Tamar Schlick
Evaluated 19 Mar 2002

Structural insights into group II intron catalysis and branch-site selection.
Zhang L, Doudna JA
Science 2002 Mar 15 295(5562):2084-8 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Samuel Butcher / Scott K Silverman / Peter Qin / Oliver Weichenrieder
Evaluated 19 Mar 2002

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