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Pui-Yan Kwok
Cardiovascular Research Institute and Department of Dermatology, University of California, San Francisco, United States of America

Faculty Member: Genomics & Genetics > Genomics [ since 28 March 2002 ]
[ Evaluations ]
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Evaluations

Massively parallel exon capture and library-free resequencing across 16 genomes.
Turner EH, Lee C, …, Nickerson DA, Shendure J
Nat Methods 2009 May 6(5):315-6 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Kevin Thornton / Pui-Yan Kwok
Evaluated 29 May 2009

High-resolution mapping of copy-number alterations with massively parallel sequencing.
Chiang DY, Getz G, …, Meyerson M, Lander ES
Nat Methods 2009 Jan 6(1):99-103 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Pui-Yan Kwok / David Oppenheimer
Evaluated 2 Jan 2009

Identification of genetic variants using bar-coded multiplexed sequencing.
Craig DW, Pearson JV, …, Homer N, Huentelman MJ
Nat Methods 2008 Sep 14 [abstract on PubMed] [related articles] [full text]
Selected by | Pui-Yan Kwok
Evaluated 25 Sep 2008

Alta-Cyclic: a self-optimizing base caller for next-generation sequencing.
Erlich Y, Mitra PP, …, McCombie WR, Hannon GJ
Nat Methods 2008 Aug 5(8):679-82 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Pui-Yan Kwok
Evaluated 27 Aug 2008

Linkage disequilibrium between STRPs and SNPs across the human genome.
Payseur BA, Place M, Weber JL
Am J Hum Genet 2008 May 82(5):1039-50 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Pui-Yan Kwok
Evaluated 1 Jul 2008

Whole-genome sequencing and variant discovery in C. elegans.
Hillier LW, Marth GT, …, Wilson RK, Mardis ER
Nat Methods 2008 Feb 5(2):183-8 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Pui-Yan Kwok
Evaluated 5 Mar 2008

Gene synthesis by circular assembly amplification.
Bang D, Church GM
Nat Methods 2008 Jan 5(1):37-9 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Pui-Yan Kwok
Evaluated 11 Jan 2008

Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome.
Emanuelsson O, Nagalakshmi U, …, Snyder M, Gerstein MB
Genome Res 2007 Jun 17(6):886-97 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Pui-Yan Kwok
Evaluated 14 Aug 2007

Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs.
Ponjavic J, Ponting CP, Lunter G
Genome Res 2007 May 17(5):556-65 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Pui-Yan Kwok
Evaluated 18 May 2007

PolyScan: an automatic indel and SNP detection approach to the analysis of human resequencing data.
Chen K, McLellan MD, …, Wilson RK, Mardis ER
Genome Res 2007 May 17(5):659-66 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Pui-Yan Kwok
Evaluated 18 May 2007

Convergent adaptation of human lactase persistence in Africa and Europe.
Tishkoff SA, Reed FA, …, Wray GA, Deloukas P
Nat Genet 2007 Jan 39(1):31-40 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Pui-Yan Kwok / Michele Ramsay
Evaluated 9 Jan 2007

Evaluating coverage of genome-wide association studies.
Barrett JC, Cardon LR
Nat Genet 2006 Jun 38(6):659-62 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Pui-Yan Kwok
Evaluated 28 Sep 2006

Evaluating and improving power in whole-genome association studies using fixed marker sets.
Pe'er I, de Bakker PI, …, Altshuler D, Daly MJ
Nat Genet 2006 Jun 38(6):663-7 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Pui-Yan Kwok
Evaluated 28 Sep 2006

Joint analysis is more efficient than replication-based analysis for two-stage genome-wide association studies.
Skol AD, Scott LJ, Abecasis GR, Boehnke M
Nat Genet 2006 Feb 38(2):209-13 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Jurg Ott / Pui-Yan Kwok
Evaluated 27 Feb 2006

A high-resolution survey of deletion polymorphism in the human genome.
Conrad DF, Andrews TD, …, Hurles ME, Pritchard JK
Nat Genet 2006 Jan 38(1):75-81 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Emmanouil Dermitzakis / Chris Ponting / Pui-Yan Kwok / Stephen Scherer
Evaluated 19 Jan 2006

Common deletions and SNPs are in linkage disequilibrium in the human genome.
Hinds DA, Kloek AP, …, Chen X, Frazer KA
Nat Genet 2006 Jan 38(1):82-5 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Emmanouil Dermitzakis / Pui-Yan Kwok / Stephen Scherer
Evaluated 17 Jan 2006

Accurate multiplex polony sequencing of an evolved bacterial genome.
Shendure J, Porreca GJ, …, Mitra RD, Church GM
Science 2005 Sep 9 309(5741):1728-32 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Grant Morahan / Pui-Yan Kwok / Karin Schmitt / Tony Long / Sachdev Sidhu
Evaluated 21 Sep 2005

The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern.
De La Vega FM, Isaac H, …, Spier EG, Gilbert DA
Genome Res 2005 Apr 15(4):454-62 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Pui-Yan Kwok
Evaluated 6 May 2005

Systematic evaluation of genetic variation at the androgen receptor locus and risk of prostate cancer in a multiethnic cohort study.
Freedman ML, Pearce CL, …, Henderson BE, Altshuler D
Am J Hum Genet 2005 Jan 76(1):82-90 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Pui-Yan Kwok
Evaluated 26 Jan 2005

Molecular mechanism for distinct neurological phenotypes conveyed by allelic truncating mutations.
Inoue K, Khajavi M, …, Wegner M, Lupski JR
Nat Genet 2004 Apr 36(4):361-9 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Michael O'Donovan / Jonathan Flint / Sue Malcolm / Pui-Yan Kwok
Evaluated 28 Oct 2004

Multiple rare alleles contribute to low plasma levels of HDL cholesterol.
Cohen JC, Kiss RS, …, McPherson R, Hobbs HH
Science 2004 Aug 6 305(5685):869-72 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jonathan Flint / Pui-Yan Kwok / Michael O'Donovan
Evaluated 3 Sep 2004

DNA mapping using microfluidic stretching and single-molecule detection of fluorescent site-specific tags.
Chan EY, Goncalves NM, …, Gullans SR, Gilmanshin R
Genome Res 2004 Jun 14(6):1137-46 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Karin Schmitt / Pui-Yan Kwok
Evaluated 3 Aug 2004

Parallel genotyping of over 10,000 SNPs using a one-primer assay on a high-density oligonucleotide array.
Matsuzaki H, Loi H, …, Jones KW, Mei R
Genome Res 2004 Mar 14(3):414-25 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Pui-Yan Kwok
Evaluated 31 Mar 2004

Distribution of recombination crossovers and the origin of haplotype blocks: the interplay of population history, recombination, and mutation.
Wang N, Akey JM, …, Chakraborty R, Jin L
Am J Hum Genet 2002 Nov 71(5):1227-34 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Pui-Yan Kwok
Evaluated 5 Feb 2003

Human genome sequence variation and the influence of gene history, mutation and recombination.
Reich DE, Schaffner SF, …, Lander ES, Altshuler D
Nat Genet 2002 Sep 32(1):135-42 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Pui-Yan Kwok / Karin Schmitt
Evaluated 16 Sep 2002

iFRET: an improved fluorescence system for DNA-melting analysis.
Howell WM, Jobs M, Brookes AJ
Genome Res 2002 Sep 12(9):1401-7 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Pui-Yan Kwok
Evaluated 16 Sep 2002

Genome complexity reduction for SNP genotyping analysis.
Jordan B, Charest A, …, Housman DE, Landers JE
Proc Natl Acad Sci U S A 2002 Mar 5 99(5):2942-7 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Pui-Yan Kwok
Evaluated 31 May 2002

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