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Andrew S McCallion
McKusick-Nathans Institute for Genetic Medicine, Johns Hopkins Medical Institute, Baltimore, United States of America

Faculty Member: Genomics & Genetics > Genomics [ since 11 August 2004 ]
[ Biography ] [ Homepage ] [ Evaluations ]
Biography

Dr Andrew McCallion is a native of Northern Ireland and grew up in Belfast. His undergraduate and graduate training was completed at the Queen's University of Belfast and the University of Glasgow (Scotland). He spent a brief period as a Staff Scientist for Neuropa Ltd (UK) a biotech startup with a focus on drug target development for neurodegenerative disorders. His work with Dr Aravinda Chakravarti at Johns Hopkins uncovered genetic interaction between the RET receptor tyrosine kinase and the endothelin type B receptor in the genesis of Hirschsprung disease (HSCR) and subsequently recapitulated the clinical phenotype in mice. Dr McCallion was appointed as Assistant Professor of Comparative Medicine and in the McKusick-Nathans Institute of Genetic Medicine (IGM) in mid 2003. His present work focuses on the determination of biological and disease relevance of functional noncoding DNA, using functional genomic approaches in model organisms. Recent work in his lab has contributed to the identification of a novel and relatively common noncoding HSCR-susceptibility mutation at RET - a collaborative effort with the group of Dr Chakravarti (IGM, Institute of Genetic Medicine). More recently Dr McCallion and his colleague Dr Shannon Fisher in the IGM have developed transgenic screening techniques in Zebrafish that facilitate the rapid examination of putatively regulatory noncoding DNA. His work aims to integrate molecular, cellular and in vivo strategies to establish paradigms for comprehensive functional analysis of non-coding, putatively regulatory sequences that may be applied to virtually any locus.

Home page

http://www.hopkinsmedicine.org/geneticmedicine/

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Evaluations

Dissecting transcription regulatory pathways through a new bacterial one-hybrid reporter system.
Guo M, Feng H, …, Feng Y, He ZG
Genome Res 2009 Jul 19(7):1301-8 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Megana Prasad and Andrew S McCallion
Evaluated 15 Jul 2009

Local DNA topography correlates with functional noncoding regions of the human genome.
Parker SC, Hansen L, …, Tullius TD, Margulies EH
Science 2009 Apr 17 324(5925):389-92 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Yan Xu and Makoto Komiyama / Megana Prasad and Andrew S McCallion / Jim Maher
Evaluated 15 Apr 2009

ChIP-seq accurately predicts tissue-specific activity of enhancers.
Visel A, Blow MJ, …, Rubin EM, Pennacchio LA
Nature 2009 Feb 12 457(7231):854-8 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Filippo Rijli / Cristina A. de Frutos and Alejandro Barrallo-Gimeno and M. Angela Nieto / Megana Prasad and Andrew S McCallion / Fernando Casares / Hans van Bokhoven / Jane Johnson / Michael Zhang / Donald Nierlich and Aldons J Lusis
Evaluated 4 Mar 2009

Targeted screening of cis-regulatory variation in human haplotypes.
Verlaan DJ, Ge B, …, Kwan T, Pastinen T
Genome Res 2009 Jan 19(1):118-27 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Andrew S. McCallion
Evaluated 6 Feb 2009

A new method, using cis-regulatory control, for blocking embryonic gene expression.
Smith J, Davidson EH
Dev Biol 2008 Jun 15 318(2):360-5 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Andrew S. McCallion
Evaluated 2 Jul 2008

A survey of allelic imbalance in F1 mice.
Campbell CD, Kirby A, …, Daly MJ, Hirschhorn JN
Genome Res 2008 Apr 18(4):555-563 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Andrew S. McCallion
Evaluated 25 Apr 2008

Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome.
Xi H, Shulha HP, …, Weng Z, Crawford GE
PLoS Genet 2007 Aug 3(8):e136 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Andrew S. McCallion
Evaluated 7 Feb 2008

Deletion of ultraconserved elements yields viable mice.
Ahituv N, Zhu Y, …, Pennacchio LA, Rubin EM
PLoS Biol 2007 Sep 5(9):e234 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jane Hewitt / Andrew S. McCallion / Panayiotis (Takis) Benos
Evaluated 22 Oct 2007

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
ENCODE Project Consortium
Nature 2007 Jun 14 447(7146):799-816 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | David States / Andrew S McCallion / Charles Coutelle
Evaluated 2 Aug 2007

Evolutionary and biomedical insights from the rhesus macaque genome.
Rhesus Macaque Genome Sequencing and Analysis Consortium, Gibbs RA, …, Smith KE, Zwieg AS
Science 2007 Apr 13 316(5822):222-34 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Andrew S McCallion / Victoria Prince
Evaluated 18 May 2007

A hexanucleotide element directs microRNA nuclear import.
Hwang HW, Wentzel EA, Mendell JT
Science 2007 Jan 5 315(5808):97-100 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Andrew S McCallion / Elsebet Lund
Evaluated 17 May 2007

Interchromosomal interactions and olfactory receptor choice.
Lomvardas S, Barnea G, …, Kirkland J, Axel R
Cell 2006 Jul 28 126(2):403-13 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | David Ish-Horowicz / David Schatz / Andrew Belmont / Andrew S McCallion / Monica Justice
Evaluated 21 Dec 2006

Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene.
Janssens H, Hou S, …, Sharp D, Reinitz J
Nat Genet 2006 Oct 38(10):1159-65 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Andrew S McCallion
Evaluated 25 Oct 2006

Close sequence comparisons are sufficient to identify human cis-regulatory elements.
Prabhakar S, Poulin F, …, Couronne O, Pennacchio LA
Genome Res 2006 Jul 16(7):855-63 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Arcady Mushegian / Andrew S McCallion
Evaluated 31 Jul 2006

Genome-wide analysis of mammalian promoter architecture and evolution.
Carninci P, Sandelin A, …, Hume DA, Hayashizaki Y
Nat Genet 2006 Jun 38(6):626-35 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Andrew S McCallion / Ulf Pettersson / Ian Hall
Evaluated 14 Jun 2006

Expression profiling the developing mammalian enteric nervous system identifies marker and candidate Hirschsprung disease genes.
Heanue TA, Pachnis V
Proc Natl Acad Sci U S A 2006 May 2 103(18):6919-24 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Andrew S McCallion
Evaluated 15 May 2006

Identification of intrinsic determinants of midbrain dopamine neurons.
Andersson E, Tryggvason U, …, Perlmann T, Ericson J
Cell 2006 Jan 27 124(2):393-405 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Andrew S McCallion / Gordon Fishell / Jeffrey Macklis
Evaluated 11 Apr 2006

Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key.
Vavouri T, McEwen GK, …, Gilks WR, Elgar G
Trends Genet 2006 Jan 22(1):5-10 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Jim Thomas / Andrew S McCallion
Evaluated 10 Feb 2006

An aneuploid mouse strain carrying human chromosome 21 with Down syndrome phenotypes.
O'Doherty A, Ruf S, …, Tybulewicz VL, Fisher EM
Science 2005 Sep 23 309(5743):2033-7 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Peter Scambler / Colin Stewart / David P Wolfer / William H Colledge / Andrew S McCallion
Evaluated 25 Nov 2005

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
Siepel A, Bejerano G, …, Miller W, Haussler D
Genome Res 2005 Aug 15(8):1034-50 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Jim Thomas / Andrew S McCallion / Chris Ponting
Evaluated 7 Sep 2005

Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila.
Gompel N, Prud'homme B, …, Kassner VA, Carroll SB
Nature 2005 Feb 3 433(7025):481-7 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Anthony Graham / Filippo Rijli / Andrew S McCallion
Evaluated 4 Apr 2005

Mouse brain organization revealed through direct genome-scale TF expression analysis.
Gray PA, Fu H, …, Stiles CD, Ma Q
Science 2004 Dec 24 306(5705):2255-7 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Christopher A. Walsh / Jack Feldman / Andrew S McCallion / Susan Akana
Evaluated 22 Feb 2005

Megabase deletions of gene deserts result in viable mice.
Nóbrega MA, Zhu Y, …, Afzal V, Rubin EM
Nature 2004 Oct 21 431(7011):988-93 [abstract on PubMed] [related articles] [full text] [order article]
Selected by | Jim Thomas / Deyou Zheng / Marie-Angele Grandbastien / Andrew S McCallion
Evaluated 4 Feb 2005

Expression profiling and comparative genomics identify a conserved regulatory region controlling midline expression in the zebrafish embryo.
Dickmeis T, Plessy C, …, Fischer N, Strähle U
Genome Res 2004 Feb 14(2):228-38 [abstract on PubMed] [related articles] [FREE full text]
Selected by | Andrew S McCallion / Thomas Mitchell-Olds
Evaluated 4 Oct 2004

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